IL_6OKK_069

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_069 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1386

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6OKK|1|A|C|1950
6OKK|1|A|G|1951
6OKK|1|A|A|1952
6OKK|1|A|U|1953
*
6OKK|1|A|A|2036
6OKK|1|A|A|2037
6OKK|1|A|A|2038
6OKK|1|A|G|2039

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S23