IL_6OKK_074

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGAC*GGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_074 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1464

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6OKK|1|A|U|1975
6OKK|1|A|G|1976
6OKK|1|A|G|1977
6OKK|1|A|A|1978
6OKK|1|A|C|1979
*
6OKK|1|A|G|2011
6OKK|1|A|G|2012
6OKK|1|A|A|2013
6OKK|1|A|A|2014
6OKK|1|A|A|2015

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain L

40S ribosomal protein S8