IL_6OKK_075
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAGA*UUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_075 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3094
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6OKK|1|A|C|1979
6OKK|1|A|A|1980
6OKK|1|A|A|1981
6OKK|1|A|G|1982
6OKK|1|A|A|1983
*
6OKK|1|A|U|2007
6OKK|1|A|U|2008
6OKK|1|A|C|2009
6OKK|1|A|U|2010
6OKK|1|A|G|2011
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S6
- Chain L
- 40S ribosomal protein S8
Coloring options: