IL_6OKK_083
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGU*AGAGUAAC
- Length
- 11 nucleotides
- Bulged bases
- 6OKK|1|A|G|546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_083 not in the Motif Atlas
- Homologous match to IL_8CRE_418
- Geometric discrepancy: 0.2969
- The information below is about IL_8CRE_418
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02511.2
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
6OKK|1|A|G|521
6OKK|1|A|G|522
6OKK|1|A|U|523
*
6OKK|1|A|A|543
6OKK|1|A|G|544
6OKK|1|A|A|545
6OKK|1|A|G|546
6OKK|1|A|U|547
6OKK|1|A|A|548
6OKK|1|A|A|549
6OKK|1|A|C|550
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain f
- 40S ribosomal protein S30
Coloring options: