IL_6OLE_127

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCCG*CC

Length

8 nucleotides

Bulged bases

6OLE|1|t|C|495, 6OLE|1|t|C|496, 6OLE|1|t|C|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_127 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.301

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6OLE|1|t|G|493
6OLE|1|t|G|494
6OLE|1|t|C|495
6OLE|1|t|C|496
6OLE|1|t|C|497
6OLE|1|t|G|498
*
6OLE|1|t|C|648
6OLE|1|t|C|649

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4