IL_6OLE_212

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6OLE|1|t|A|3872, 6OLE|1|t|C|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_212 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1283

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OLE|1|t|G|3871
6OLE|1|t|A|3872
6OLE|1|t|A|3873
*
6OLE|1|t|U|4520
6OLE|1|t|A|4521
6OLE|1|t|C|4522
6OLE|1|t|C|4523

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain y

Cadherin-1