IL_6OLE_216
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6OLE|1|t|G|4054, 6OLE|1|t|G|4056, 6OLE|1|t|G|4057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLE_216 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.226
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6OLE|1|t|G|4052
6OLE|1|t|U|4053
6OLE|1|t|G|4054
6OLE|1|t|A|4055
6OLE|1|t|G|4056
6OLE|1|t|G|4057
6OLE|1|t|C|4058
*
6OLE|1|t|G|4123
6OLE|1|t|C|4124
6OLE|1|t|U|4125
6OLE|1|t|C|4126
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain I
- 60S ribosomal protein L7a
- Chain Y
- 60S ribosomal protein L23a
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