IL_6OLE_235

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6OLE|1|t|C|4682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_235 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.3358

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6OLE|1|t|C|4544
6OLE|1|t|C|4545
6OLE|1|t|A|4546
6OLE|1|t|U|4547
*
6OLE|1|t|A|4679
6OLE|1|t|G|4680
6OLE|1|t|G|4681
6OLE|1|t|C|4682
6OLE|1|t|G|4683

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a