IL_6OLF_010
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_010 not in the Motif Atlas
- Homologous match to IL_5TBW_376
- Geometric discrepancy: 0.1978
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
6OLF|1|E|A|32
6OLF|1|E|U|33
6OLF|1|E|C|34
6OLF|1|E|U|35
6OLF|1|E|C|36
*
6OLF|1|E|G|41
6OLF|1|E|A|42
6OLF|1|E|U|43
6OLF|1|E|C|44
6OLF|1|E|U|45
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L5
- Chain L
- 60S ribosomal protein L11
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: