3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6OLF|1|S2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_041 not in the Motif Atlas
Geometric match to IL_4V88_407
Geometric discrepancy: 0.3137
The information below is about IL_4V88_407
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6OLF|1|S2|G|606
6OLF|1|S2|U|607
6OLF|1|S2|C|608
*
6OLF|1|S2|G|635
6OLF|1|S2|C|636

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain Se
40S ribosomal protein S30

Coloring options:


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