IL_6OLF_051

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_051 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.1452

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6OLF|1|S2|C|877
6OLF|1|S2|G|878
6OLF|1|S2|C|879
*
6OLF|1|S2|G|907
6OLF|1|S2|A|908
6OLF|1|S2|G|909

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7