IL_6OLF_083
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UA*UCCCCCA
- Length
- 9 nucleotides
- Bulged bases
- 6OLF|1|S2|C|1433, 6OLF|1|S2|C|1434, 6OLF|1|S2|C|1435, 6OLF|1|S2|C|1436, 6OLF|1|S2|C|1437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_083 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2093
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6OLF|1|S2|U|1408
6OLF|1|S2|A|1409
*
6OLF|1|S2|U|1432
6OLF|1|S2|C|1433
6OLF|1|S2|C|1434
6OLF|1|S2|C|1435
6OLF|1|S2|C|1436
6OLF|1|S2|C|1437
6OLF|1|S2|A|1438
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
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