IL_6OLF_110

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_110 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2513

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6OLF|1|t|C|450
6OLF|1|t|G|451
6OLF|1|t|C|452
6OLF|1|t|C|453
*
6OLF|1|t|G|689
6OLF|1|t|C|690
6OLF|1|t|G|691
6OLF|1|t|G|692

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L6

Chain f

60S ribosomal protein L32

Chain r

60S ribosomal protein L28