3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GG*CGCC
Length
6 nucleotides
Bulged bases
6OLF|1|t|C|1361
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_141 not in the Motif Atlas
Geometric match to IL_6JXM_001
Geometric discrepancy: 0.261
The information below is about IL_6JXM_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

6OLF|1|t|G|1343
6OLF|1|t|G|1344
*
6OLF|1|t|C|1359
6OLF|1|t|G|1360
6OLF|1|t|C|1361
6OLF|1|t|C|1362

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain M
60S ribosomal protein L13
Chain O
60S ribosomal protein L15

Coloring options:


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