IL_6OLF_143

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_143 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.297

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OLF|1|t|C|1413
6OLF|1|t|C|1414
6OLF|1|t|G|1415
6OLF|1|t|A|1416
6OLF|1|t|G|1417
*
6OLF|1|t|C|1432
6OLF|1|t|C|1433
6OLF|1|t|G|1434
6OLF|1|t|A|1435
6OLF|1|t|G|1436

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L18