IL_6OLF_163

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

6OLF|1|t|G|1797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_163 not in the Motif Atlas

Homologous match to IL_5TBW_045

Geometric discrepancy: 0.1669

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6OLF|1|t|C|1796
6OLF|1|t|G|1797
6OLF|1|t|C|1798
*
6OLF|1|t|G|1805
6OLF|1|t|G|1806

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L5

Chain U

60S ribosomal protein L21

Chain c

60S ribosomal protein L29