IL_6OLF_187

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6OLF|1|t|U|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_187 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2411

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6OLF|1|t|C|2625
6OLF|1|t|A|2626
6OLF|1|t|G|2627
*
6OLF|1|t|C|2664
6OLF|1|t|G|2665
6OLF|1|t|U|2666
6OLF|1|t|G|2667

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L34