IL_6OLF_204

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_204 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.1498

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6OLF|1|t|G|3751
6OLF|1|t|C|3752
*
6OLF|1|t|G|3782
6OLF|1|t|C|3783
6OLF|1|t|A|3784
6OLF|1|t|U|3785

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain o

60S ribosomal protein L41

Chain u

Transfer RNA; tRNA