IL_6OLF_207

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6OLF|1|t|A|3872, 6OLF|1|t|C|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_207 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1478

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OLF|1|t|G|3871
6OLF|1|t|A|3872
6OLF|1|t|A|3873
*
6OLF|1|t|U|4520
6OLF|1|t|A|4521
6OLF|1|t|C|4522
6OLF|1|t|C|4523

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain y

Cadherin-1