IL_6OLF_268

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_268 not in the Motif Atlas

Geometric match to IL_8CRE_458

Geometric discrepancy: 0.3761

The information below is about IL_8CRE_458

Detailed Annotation

Non-canonical cWW with near cWH

Broad Annotation

Non-canonical cWW with near cWH

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6OLF|1|S2|A|1291
6OLF|1|S2|C|1292
6OLF|1|S2|A|1293
6OLF|1|S2|G|1294
*
6OLF|1|S2|C|1305
6OLF|1|S2|U|1306
6OLF|1|S2|U|1307
6OLF|1|S2|U|1308

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S27a