IL_6OLF_277
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_277 not in the Motif Atlas
- Geometric match to IL_7A0S_056
- Geometric discrepancy: 0.3087
- The information below is about IL_7A0S_056
- Detailed Annotation
- Double sheared with near cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6OLF|1|S2|G|1732
6OLF|1|S2|U|1733
6OLF|1|S2|G|1734
6OLF|1|S2|A|1735
6OLF|1|S2|G|1736
*
6OLF|1|S2|C|1798
6OLF|1|S2|G|1799
6OLF|1|S2|A|1800
6OLF|1|S2|A|1801
6OLF|1|S2|C|1802
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain W
- 60S ribosomal protein L23
- Chain X
- 60S ribosomal protein L24
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
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