IL_6OLF_318

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6OLF|1|t|A|4165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_318 not in the Motif Atlas

Homologous match to IL_8P9A_325

Geometric discrepancy: 0.194

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6OLF|1|t|G|4153
6OLF|1|t|A|4154
*
6OLF|1|t|U|4164
6OLF|1|t|A|4165
6OLF|1|t|C|4166

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L10

Chain U

60S ribosomal protein L21

Chain c

60S ribosomal protein L29

Chain p

60S ribosomal protein L36a