IL_6OLG_014

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_014 not in the Motif Atlas

Geometric match to IL_9H3G_217

Geometric discrepancy: 0.3893

The information below is about IL_9H3G_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75737.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6OLG|1|A2|G|189
6OLG|1|A2|G|190
6OLG|1|A2|C|191
*
6OLG|1|A2|G|243
6OLG|1|A2|G|244
6OLG|1|A2|C|245

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L26