IL_6OLG_019

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6OLG|1|A2|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_019 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3876

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OLG|1|A2|G|437
6OLG|1|A2|G|438
6OLG|1|A2|U|439
6OLG|1|A2|C|440
*
6OLG|1|A2|G|1283
6OLG|1|A2|C|1284
6OLG|1|A2|U|1285
6OLG|1|A2|A|1286
6OLG|1|A2|C|1287

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ae

60S ribosomal protein L32

Chain Af

60S ribosomal protein L35a