IL_6OLG_042

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGG*CCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_042 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3047

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6OLG|1|A2|G|733
6OLG|1|A2|G|734
6OLG|1|A2|G|735
6OLG|1|A2|G|736
*
6OLG|1|A2|C|907
6OLG|1|A2|C|908
6OLG|1|A2|C|909

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a