IL_6OLG_047

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACG*CCGUCG

Length

11 nucleotides

Bulged bases

6OLG|1|A2|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_047 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3136

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OLG|1|A2|C|1068
6OLG|1|A2|C|1069
6OLG|1|A2|A|1070
6OLG|1|A2|C|1071
6OLG|1|A2|G|1072
*
6OLG|1|A2|C|1189
6OLG|1|A2|C|1190
6OLG|1|A2|G|1191
6OLG|1|A2|U|1192
6OLG|1|A2|C|1193
6OLG|1|A2|G|1194

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7

Chain AT

60S ribosomal protein L21