IL_6OLG_052

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUC*GGGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_052 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3255

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OLG|1|A2|G|1408
6OLG|1|A2|G|1409
6OLG|1|A2|A|1410
6OLG|1|A2|U|1411
6OLG|1|A2|C|1412
*
6OLG|1|A2|G|1437
6OLG|1|A2|G|1438
6OLG|1|A2|G|1439
6OLG|1|A2|C|1440
6OLG|1|A2|A|1441
6OLG|1|A2|C|1442

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L18

Chain Ab

60S ribosomal protein L29