IL_6OLG_069
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6OLG|1|A2|G|1723, 6OLG|1|A2|A|1724, 6OLG|1|A2|A|1769, 6OLG|1|A2|A|1770
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_069 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1536
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6OLG|1|A2|G|1721
6OLG|1|A2|C|1722
6OLG|1|A2|G|1723
6OLG|1|A2|A|1724
6OLG|1|A2|A|1725
6OLG|1|A2|U|1726
*
6OLG|1|A2|A|1768
6OLG|1|A2|A|1769
6OLG|1|A2|A|1770
6OLG|1|A2|C|1771
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 60S ribosomal protein L5
- Chain AI
- 60S ribosomal protein L10
- Chain AT
- 60S ribosomal protein L21
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