IL_6OLG_082
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6OLG|1|A2|C|1916, 6OLG|1|A2|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLG_082 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2143
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OLG|1|A2|G|1914
6OLG|1|A2|A|1915
6OLG|1|A2|C|1916
6OLG|1|A2|C|1917
6OLG|1|A2|C|1918
6OLG|1|A2|C|1919
6OLG|1|A2|A|1920
6OLG|1|A2|G|1921
6OLG|1|A2|A|1922
6OLG|1|A2|A|1923
6OLG|1|A2|A|1924
6OLG|1|A2|A|1925
*
6OLG|1|A2|U|2019
6OLG|1|A2|G|2020
6OLG|1|A2|A|2021
6OLG|1|A2|A|2022
6OLG|1|A2|A|2023
6OLG|1|A2|A|2024
6OLG|1|A2|U|2025
6OLG|1|A2|G|2026
6OLG|1|A2|G|2027
6OLG|1|A2|A|2028
6OLG|1|A2|U|2029
6OLG|1|A2|G|2030
6OLG|1|A2|G|2031
6OLG|1|A2|C|2032
6OLG|1|A2|G|2033
6OLG|1|A2|C|2034
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- 60S ribosomal protein L3
- Chain AI
- 60S ribosomal protein L10
- Chain AO
- 60S ribosomal protein L13a
- Chain Af
- 60S ribosomal protein L35a
- Chain Am
- 60S ribosomal protein L40
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