IL_6OLG_085

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6OLG|1|A2|A|1983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_085 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2933

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6OLG|1|A2|G|1982
6OLG|1|A2|A|1983
6OLG|1|A2|G|1984
6OLG|1|A2|U|1985
6OLG|1|A2|G|1986
*
6OLG|1|A2|C|1995
6OLG|1|A2|U|1996
6OLG|1|A2|C|1997

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Aq

60S ribosomal protein L12