IL_6OLG_108

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6OLG|1|A2|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_108 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.109

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|C|2846
6OLG|1|A2|G|2847
6OLG|1|A2|U|2848
6OLG|1|A2|A|2849
6OLG|1|A2|A|2850
6OLG|1|A2|C|2851
*
6OLG|1|A2|G|2856
6OLG|1|A2|G|2857
6OLG|1|A2|A|2858
6OLG|1|A2|U|2859
6OLG|1|A2|A|2860
6OLG|1|A2|A|2861
6OLG|1|A2|G|2862

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain Ap

60S ribosomal protein L37a

Chain B1

Small subunit ribosomal RNA; SSU rRNA