IL_6OLG_114

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6OLG|1|A2|A|3717, 6OLG|1|A2|A|3718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_114 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1878

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6OLG|1|A2|U|3675
6OLG|1|A2|G|3676
*
6OLG|1|A2|U|3716
6OLG|1|A2|A|3717
6OLG|1|A2|A|3718
6OLG|1|A2|A|3719

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain B1

Small subunit ribosomal RNA; SSU rRNA