IL_6OLG_116

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_116 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1784

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|U|3686
6OLG|1|A2|C|3687
6OLG|1|A2|A|3688
6OLG|1|A2|A|3689
6OLG|1|A2|A|3690
6OLG|1|A2|G|3691
6OLG|1|A2|U|3692
*
6OLG|1|A2|A|3703
6OLG|1|A2|A|3704
6OLG|1|A2|U|3705
6OLG|1|A2|G|3706
6OLG|1|A2|A|3707
6OLG|1|A2|A|3708
6OLG|1|A2|G|3709

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain Ai

60S ribosomal protein L36

Chain Ao

60S ribosomal protein L36a