IL_6OLG_119

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6OLG|1|A2|A|3756, 6OLG|1|A2|C|3762, 6OLG|1|A2|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_119 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1816

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OLG|1|A2|C|3752
6OLG|1|A2|C|3753
6OLG|1|A2|A|3754
6OLG|1|A2|A|3755
6OLG|1|A2|A|3756
6OLG|1|A2|U|3757
6OLG|1|A2|G|3758
6OLG|1|A2|C|3759
6OLG|1|A2|C|3760
6OLG|1|A2|U|3761
6OLG|1|A2|C|3762
6OLG|1|A2|G|3763
*
6OLG|1|A2|C|3779
6OLG|1|A2|G|3780
6OLG|1|A2|C|3781
6OLG|1|A2|G|3782

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain B1

Small subunit ribosomal RNA; SSU rRNA