IL_6OLG_126

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_126 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3567

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6OLG|1|A2|U|3921
6OLG|1|A2|G|3922
6OLG|1|A2|A|3923
*
6OLG|1|A2|U|4030
6OLG|1|A2|G|4031
6OLG|1|A2|A|4032

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Au

60S ribosomal protein L10a

Chain BB

40S ribosomal protein S3a