IL_6OLG_143

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6OLG|1|A2|G|4484, 6OLG|1|A2|A|4485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_143 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1245

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OLG|1|A2|C|4418
6OLG|1|A2|U|4419
6OLG|1|A2|C|4420
*
6OLG|1|A2|G|4482
6OLG|1|A2|U|4483
6OLG|1|A2|G|4484
6OLG|1|A2|A|4485
6OLG|1|A2|G|4486

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A

Cadherin-1

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23