IL_6OLG_200

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_200 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.138

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6OLG|1|B1|C|491
6OLG|1|B1|C|492
6OLG|1|B1|A|493
6OLG|1|B1|C|494
6OLG|1|B1|U|495
*
6OLG|1|B1|A|508
6OLG|1|B1|G|509

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BJ

40S ribosomal protein S9

Chain BY

40S ribosomal protein S24