IL_6OLG_219

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6OLG|1|B1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_219 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2186

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6OLG|1|B1|G|925
6OLG|1|B1|A|926
6OLG|1|B1|C|927
*
6OLG|1|B1|G|1014
6OLG|1|B1|U|1015
6OLG|1|B1|U|1016
6OLG|1|B1|U|1017

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain Ac

60S ribosomal protein L30

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27