IL_6OLG_223

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6OLG|1|B1|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_223 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1795

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6OLG|1|B1|G|952
6OLG|1|B1|C|953
6OLG|1|B1|U|954
6OLG|1|B1|A|955
6OLG|1|B1|G|956
*
6OLG|1|B1|C|967
6OLG|1|B1|U|968
6OLG|1|B1|U|969
6OLG|1|B1|G|970
6OLG|1|B1|G|971
6OLG|1|B1|A|972
6OLG|1|B1|C|973
6OLG|1|B1|C|974

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain BO

40S ribosomal protein S14