IL_6OLG_227

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_227 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.1647

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6OLG|1|B1|C|1098
6OLG|1|B1|G|1099
6OLG|1|B1|A|1100
6OLG|1|B1|U|1101
*
6OLG|1|B1|G|1131
6OLG|1|B1|C|1132
6OLG|1|B1|A|1133
6OLG|1|B1|G|1134

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BB

40S ribosomal protein S3a

Chain BN

40S ribosomal protein S13

Chain BR

40S ribosomal protein S17

Chain Ba

40S ribosomal protein S26