IL_6OLG_230

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_230 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6OLG|1|B1|G|1168
6OLG|1|B1|G|1169
6OLG|1|B1|A|1170
6OLG|1|B1|G|1171
6OLG|1|B1|U|1172
6OLG|1|B1|A|1173
6OLG|1|B1|U|1174
6OLG|1|B1|G|1175
*
6OLG|1|B1|U|1186
6OLG|1|B1|G|1187
6OLG|1|B1|A|1188
6OLG|1|B1|A|1189
6OLG|1|B1|A|1190
6OLG|1|B1|C|1191

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain BX

40S ribosomal protein S23