IL_6OLG_263

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

6OLG|1|B1|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_263 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3819

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6OLG|1|B1|C|1750
6OLG|1|B1|C|1751
6OLG|1|B1|C|1752
*
6OLG|1|B1|G|1780
6OLG|1|B1|A|1781
6OLG|1|B1|G|1782
6OLG|1|B1|C|1783
6OLG|1|B1|G|1784

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain BG

40S ribosomal protein S6