IL_6OLG_270

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_270 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2038

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6OLG|1|A2|G|730
6OLG|1|A2|G|731
6OLG|1|A2|C|732
6OLG|1|A2|G|733
*
6OLG|1|A2|C|909
6OLG|1|A2|C|910
6OLG|1|A2|C|911
6OLG|1|A2|C|912

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a