IL_6OLG_283

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

6OLG|1|B1|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLG_283 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.533

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OLG|1|B1|U|110
6OLG|1|B1|A|111
6OLG|1|B1|U|112
6OLG|1|B1|G|113
6OLG|1|B1|G|114
6OLG|1|B1|U|115
*
6OLG|1|B1|A|348
6OLG|1|B1|A|349
6OLG|1|B1|C|350
6OLG|1|B1|G|351

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11