IL_6OLI_012
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLI_012 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2786
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6OLI|1|E|G|71
6OLI|1|E|U|72
6OLI|1|E|U|73
6OLI|1|E|A|74
6OLI|1|E|G|75
6OLI|1|E|U|76
6OLI|1|E|A|77
6OLI|1|E|C|78
*
6OLI|1|E|G|98
6OLI|1|E|G|99
6OLI|1|E|A|100
6OLI|1|E|A|101
6OLI|1|E|U|102
6OLI|1|E|A|103
6OLI|1|E|C|104
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L5
- Chain H
- 60S ribosomal protein L7
- Chain K
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L18a
- Chain U
- 60S ribosomal protein L21
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
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