IL_6OLI_016

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_016 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1528

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6OLI|1|S2|U|26
6OLI|1|S2|A2M|27
6OLI|1|S2|U|28
*
6OLI|1|S2|G|646
6OLI|1|S2|U|647
6OLI|1|S2|A|648

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23