IL_6OLI_043

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UC(E3C)A*UCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: E3C

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_043 not in the Motif Atlas

Geometric match to IL_7LO9_004

Geometric discrepancy: 0.2193

The information below is about IL_7LO9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36940.4

Basepair signature

cWW-tSH-tWW-cWW

Number of instances in this motif group

5

Unit IDs

6OLI|1|S2|U|566
6OLI|1|S2|C|567
6OLI|1|S2|E3C|568
6OLI|1|S2|A|569
*
6OLI|1|S2|U|581
6OLI|1|S2|C|582
6OLI|1|S2|C|583
6OLI|1|S2|G|584

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24