IL_6OLI_055

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_055 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.1422

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6OLI|1|S2|G|874
6OLI|1|S2|A|875
6OLI|1|S2|C|876
*
6OLI|1|S2|G|910
6OLI|1|S2|C|911
6OLI|1|S2|C|912

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11