IL_6OLI_097
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CG(OMC)U*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLI_097 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2698
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6OLI|1|S2|C|1708
6OLI|1|S2|G|1709
6OLI|1|S2|OMC|1710
6OLI|1|S2|U|1711
*
6OLI|1|S2|A|1822
6OLI|1|S2|A|1823
6OLI|1|S2|A|1824
6OLI|1|S2|A|1825
6OLI|1|S2|G|1826
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
- Chain o
- 60S ribosomal protein L41
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain u
- Transfer RNA; tRNA
- Chain w
- mRNA
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