IL_6OLI_105

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_105 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1344

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6OLI|1|S2|C|1841
6OLI|1|S2|4AC|1842
6OLI|1|S2|G|1843
*
6OLI|1|S2|C|1856
6OLI|1|S2|G|1857
6OLI|1|S2|G|1858

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26

Chain o

60S ribosomal protein L41